Package: gcemod 0.3.0
gcemod: Generalized Competing Event Models with Lunn-McNeil Testing
Tools for fitting generalized competing event (GCE) models and estimating covariate effects on omega-plus, the ratio of the hazard for an event of interest to the hazard for a competing event, on both the cause-specific (Cox) and subdistribution (Fine-Gray) hazard scales. Confidence intervals and p-values are obtained from the Lunn-McNeil (1995) stacked (augmented) data approach. The package builds GCE risk scores from the model linear predictor, identifies risk-score cutpoints that maximize the separation in omega-plus between groups, and produces cumulative incidence ("alligator") plots by risk group and calibration plots of predicted versus observed omega-plus. Methods follow Carmona et al. (2014) <doi:10.1016/j.ijrobp.2014.03.047>, Mell et al. (2024) <doi:10.1016/j.eururo.2023.01.020>, and Lunn and McNeil (1995) <doi:10.2307/2532940>.
Authors:
gcemod_0.3.0.tar.gz
gcemod_0.3.0.zip(r-4.7-any)gcemod_0.3.0.zip(r-4.6-any)gcemod_0.3.0.zip(r-4.5-any)
gcemod_0.3.0.tgz(r-4.6-any)gcemod_0.3.0.tgz(r-4.5-any)
gcemod_0.3.0.tar.gz(r-4.7-any)gcemod_0.3.0.tar.gz(r-4.6-any)
gcemod_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
gcemod/json (API)
| # Install 'gcemod' in R: |
| install.packages('gcemod', repos = c('https://lmell-source.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lmell-source/gcemod/issues
Last updated from:9423c5d56d. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 154 | ||
| source / vignettes | OK | 206 | ||
| linux-release | OK | 198 | ||
| macos-release | OK | 200 | ||
| macos-oldrel | OK | 160 | ||
| windows-devel | OK | 108 | ||
| windows-release | OK | 89 | ||
| windows-oldrel | OK | 111 | ||
| wasm-release | OK | 130 |
Exports:gce_alligatorgce_calibrationgce_cutpointsgce_performancegce_riskscoregce_scalinggce_tidygcecoxgcefglunnmcneil
Dependencies:clicmprskcpp11farverggplot2gluegtableisobandlabelinglatticelifecycleMatrixpatchworkR6RColorBrewerrlangS7scalessurvivalvctrsviridisLitewithr